PMD

The PMD program is primarily intended for the L part, but can also be run on the M part.

The program always runs on one node, it is not possible to run it across multiple nodes.

The maximum number of cores on the L part is 8 (–ntasks=8). An error will occur if a higher value is entered.

Typical start of the job input script to run with the sbatch command:

#!/bin/bash
#SBATCH --job-name=foam_test
#SBATCH --partition=Lexpress
#SBATCH --nodes=1
#SBATCH --ntasks=8
#SBATCH --output=slurm.%N.%J.%u.out
#SBATCH --error=slurm.%N.%J.%u.err
#SBATCH --mail-type=ALL
#SBATCH --mail-user=username@it.cas.cz

Script to run PMD task on L nodes

#!/bin/bash
#SBATCH -J test3d
#SBATCH -p Lexpress
#SBATCH -N 1
#SBATCH -n 8
##SBATCH --time=2:00
#SBATCH -o slurm.%N.%J.%u.out # STDOUT
#SBATCH -e slurm.%N.%J.%u.err # STDERR
#SBATCH --mail-type=ALL
#SBATCH --mail-user=masak@it.cas.cz

#################################################################
# input section
#
TASKNAME=test_3d20_kva
declare -a PROGRAMS=(rmd3 rpd3 srh3 fefs str3)
declare -a EXTENSE=(I1 I2 I3 I4 I5)

PMDPATH=/home/pmd
  
##################################################################
# execute section
#
noprg=${#PROGRAMS[@]}
noext=${#EXTENZE[@]}

if [ $noprg != $noext ]; then
  echo "ERROR: different number of arguments in the PROGRAMS and EXTENSE fields" 
  exit 1;
fi

for ((i=0; i<$noprg; i=i+1))
do
 echo "********************************************" 
 if [ ${EXTENZE[$i]} = "-" ]; then
   printf -v prgstring "%s" "${TASKNAME}"
   printf "*** %5s %-30s ***\n" "${PROGRAMS[$i]}" "$prgstring"
   echo "********************************************" 
   date +"%d.%m.%Y %k:%M:%S"
   $PMDPATH/${PROGRAMY[$i]} ${TASKNAME}
 else
   printf -v prgstring "%s.%s" "${TASKNAME}" "${EXTENZE[$i]}"
   printf "*** %5s %-30s ***\n" "${PROGRAMS[$i]}" "$prgstring"
   echo "********************************************" 
   date +"%d.%m.%Y %k:%M:%S"
   $PMDPATH/${PROGRAMY[$i]} ${TASKNAME}.${EXTENZE[$i]} 
 fi
   status=$?      # program return code
   if test $status -ne 7
   then
    echo "Error in program" "${PROGRAMS[$i]}"
    break
   fi   
 echo " " 
done